Cluster no. 15

Cluster no. 15

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Cluster is part of supercluster: 1

Cluster characteristics:

size	9204
size_real	9204
ecount	324358
supercluster	1
annotations_summary	0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-INT 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RH 0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-unclass:Ty3-INT
pair_completeness	0.338958393948211
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.000869187309865276
satellite_probability	9.7548493215956e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	14
S5	3120
S4	3030
S7	11
S9	4
S6	3010
S2	15
S1	4
S3	1

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	5	316.0	286.0	1.0	0.0	330.0	1.0	0.0	0.0
S5	316	36800.0	35400.0	102.0	28.0	36500.0	201.0	28.5	26.0
S4	286	35400.0	34000.0	89.5	25.0	34800.0	194.0	34.5	24.5
S7	1	102.0	89.5	1.0	0.0	85.0	1.0	0.5	0.0
S9	0	28.0	25.0	0.0	0.0	25.5	0.5	0.0	0.0
S6	330	36500.0	34800.0	85.0	25.5	36200.0	192.0	27.0	33.0
S2	1	201.0	194.0	1.0	0.5	192.0	1.0	0.0	1.0
S1	0	28.5	34.5	0.5	0.0	27.0	0.0	0.0	0.0
S3	0	26.0	24.5	0.0	0.0	33.0	1.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.840	0.999	0.943	1.230	0.000	1.050	0.583	0.000	0.000
S5	0.999	0.998	1.000	1.080	1.050	1.000	1.010	0.934	0.913
S4	0.943	1.000	1.000	0.989	0.979	0.995	1.020	1.180	0.897
S7	1.230	1.080	0.989	4.140	0.000	0.911	1.960	6.400	0.000
S9	0.000	1.050	0.979	0.000	0.000	0.969	3.460	0.000	0.000
S6	1.050	1.000	0.995	0.911	0.969	1.000	0.975	0.895	1.170
S2	0.583	1.010	1.020	1.960	3.460	0.975	0.924	0.000	6.480
S1	0.000	0.934	1.180	6.400	0.000	0.895	0.000	0.000	0.000
S3	0.000	0.913	0.897	0.000	0.000	1.170	6.480	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 0.00011

CRM Ty3-GAG CRM Ty3-GAG 1 0.00011

TatV Ty3-INT TatV Ty3-INT 1 0.00011

chromo-unclass Ty3-INT chromo-unclass Ty3-INT 1 0.00011

Reina Ty3-RH Reina Ty3-RH 1 0.00011

clusters with similarity:

Cluster	Number of similarity hits

6	9260
10	2870
20	1510
33	1240
19	1020
39	686
55	269
45	263
93	251
179	16
220	16
1	1
35	1
48	1
99	1
184	1
378	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

6	1840	0.373
10	852	0.221
20	481	0.151
19	473	0.119
3	114	0.0224
55	95	0.0318
39	84	0.026
45	60	0.0162
33	41	0.0102
179	15	0.00591
29	7	0.00211
48	7	0.00216
66	7	0.00228
109	7	0.00256
67	5	0.0016
84	5	0.00166
14	4	0.00103
220	4	0.00168
2	3	0.000786
89	3	0.00109
95	3	0.00106
100	3	0.00111
145	3	0.00125
13500	3	0.00132
1	2	0.000501
13	2	0.000527
16	2	0.000718
28	2	0.000605
34	2	0.00058
80	2	0.000664
87	2	0.000691
186	2	0.000841
252	2	0.00085
4350	2	0.000879
17100	2	0.00088
29800	2	0.00088
24	1	0.000346
25	1	0.00033
26	1	0.000313
37	1	0.000332
40	1	0.000352
43	1	0.000283
47	1	0.00031
53	1	0.000354
56	1	0.000346
60	1	0.000307
61	1	0.000322
62	1	0.000372
72	1	0.000341
76	1	0.000355
81	1	0.000379
86	1	0.000361
88	1	0.000342
90	1	0.00034
99	1	0.000358
121	1	0.000394
123	1	0.000352
126	1	0.000373
128	1	0.000346
138	1	0.000404
144	1	0.000405
149	1	0.000418
155	1	0.000405
178	1	0.000406
194	1	0.000422
241	1	0.000426
317	1	0.000435
378	1	0.000435
891	1	0.000439
1610	1	0.000439
5780	1	0.00044
6200	1	0.00044
9560	1	0.00044
10500	1	0.00044
11400	1	0.00044
12300	1	0.00044
12700	1	0.00044
14300	1	0.00044
14500	1	0.00044
14500	1	0.00044
15900	1	0.00044
16800	1	0.00044
16800	1	0.00044
18600	1	0.00044
19500	1	0.00044
21100	1	0.00044
23100	1	0.00044
23600	1	0.00044
30200	1	0.00044
35100	1	0.00044
36300	1	0.00044
36400	1	0.00044
38600	1	0.00044
41200	1	0.00044
42500	1	0.00044
59500	1	0.00044
60300	1	0.00044
61000	1	0.00044

CL15 ----> CL6

No. of shared pairs: :1835

CL15 ----> CL10

No. of shared pairs: :852

CL15 ----> CL20

No. of shared pairs: :481

CL15 ----> CL19

No. of shared pairs: :473

CL15 ----> CL3

No. of shared pairs: :114

CL15 ----> CL55

No. of shared pairs: :95

CL15 ----> CL39

No. of shared pairs: :84

CL15 ----> CL45

No. of shared pairs: :60

CL15 ----> CL33

No. of shared pairs: :41

CL15 ----> CL179

No. of shared pairs: :15