Cluster no. 11

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Cluster is part of supercluster: 7

Cluster characteristics:

size 9698
size_real 9698
ecount 477447
supercluster 7
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RH
0.01% Class_I/LTR/Ty1_copia/Tork:Ty1-INT
pair_completeness 0.592446633825944
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00134048257372654
satellite_probability 8.75468016753053e-22
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 3120
S5 18
S4 16
S7 3200
S9 3180
S6 24
S2 47
S1 58
S3 37
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 48300 272.0 244.0 50500 51500 369.0 320.0 166.0 126.0
S5 272 1.0 2.0 278 246 3.0 2.0 4.5 2.0
S4 244 2.0 3.0 253 275 3.5 1.0 0.0 1.0
S7 50500 278.0 253.0 52500 53800 428.0 342.0 164.0 152.0
S9 51500 246.0 275.0 53800 55100 406.0 329.0 169.0 140.0
S6 369 3.0 3.5 428 406 4.0 4.5 0.5 1.5
S2 320 2.0 1.0 342 329 4.5 26.0 53.5 32.0
S1 166 4.5 0.0 164 169 0.5 53.5 102.0 58.0
S3 126 2.0 1.0 152 140 1.5 32.0 58.0 28.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.000 1.060 0.979 1.000 1.000 0.951 0.907 0.727 0.731
S5 1.060 0.726 1.510 1.030 0.892 1.450 1.060 3.690 2.180
S4 0.979 1.510 2.340 0.975 1.040 1.750 0.550 0.000 1.130
S7 1.000 1.030 0.975 0.998 1.000 1.060 0.928 0.690 0.848
S9 1.000 0.892 1.040 1.000 1.000 0.982 0.874 0.694 0.764
S6 0.951 1.450 1.750 1.060 0.982 1.280 1.590 0.272 1.090
S2 0.907 1.060 0.550 0.928 0.874 1.590 10.100 32.100 25.500
S1 0.727 3.690 0.000 0.690 0.694 0.272 32.100 94.500 71.400
S3 0.731 2.180 1.130 0.848 0.764 1.090 25.500 71.400 45.800

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tork Ty1-INT Tork Ty1-INT 1 1e-04
CRM Ty3-RH CRM Ty3-RH 1 1e-04

clusters with similarity:

Cluster Number of similarity hits
36 2520
140 301
68 54
110 41
57 24
531 3
54 2
8 1
9 1
954 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
36 590 0.27
140 272 0.162
68 108 0.0532
54 39 0.0188
8 37 0.0121
22 32 0.0112
4 22 0.00775
12 19 0.00781
110 15 0.008
198 14 0.00984
17 13 0.00455
9 11 0.00567
91 11 0.0058
5 9 0.0029
531 9 0.00717
83 8 0.00495
53 7 0.00389
954 7 0.00561
2820 6 0.00482
69 5 0.00212
75 5 0.00271
106 5 0.00304
21 4 0.00233
40 4 0.00221
51 4 0.00163
59 4 0.00166
173 4 0.00277
7710 4 0.00322
65 3 0.00182
157 3 0.00182
9710 3 0.00241
16100 3 0.00241
18 2 0.000801
32 2 0.00109
78 2 0.000858
162 2 0.00115
166 2 0.00142
199 2 0.0015
206 2 0.00141
232 2 0.00147
1780 2 0.00161
5700 2 0.00161
5730 2 0.00161
10900 2 0.00161
11500 2 0.00161
11700 2 0.00161
15800 2 0.00161
16000 2 0.00161
17100 2 0.00161
18300 2 0.00161
18500 2 0.00161
23600 2 0.00161
24000 2 0.00161
25400 2 0.00161
32100 2 0.00161
40200 2 0.00161
50600 2 0.00161
54500 2 0.00161
54800 2 0.00161
55700 2 0.00161
59900 2 0.00161
68900 2 0.00161
7 1 0.000373
30 1 0.000444
79 1 0.000688
100 1 0.000599
103 1 0.00067
104 1 7e-04
107 1 0.000552
124 1 0.000684
131 1 0.000633
150 1 0.000722
168 1 0.000647
172 1 0.000767
182 1 0.000707
192 1 0.000706
203 1 0.000713
209 1 0.000732
213 1 0.000721
223 1 0.000747
235 1 0.000755
253 1 0.000768
261 1 0.000775
265 1 0.000768
277 1 0.000785
280 1 0.000764
287 1 0.000771
330 1 0.000787
397 1 0.000797
404 1 0.000791
725 1 0.000797
768 1 8e-04
1130 1 0.000801
1180 1 0.000801
1230 1 8e-04
1240 1 8e-04
1620 1 0.000803
1870 1 0.000805
2170 1 0.000803
2230 1 0.000802
2510 1 0.000803
3520 1 0.000804
4030 1 0.000804
4090 1 0.000804
4110 1 0.000804
4400 1 0.000804
5400 1 0.000804
6650 1 0.000805
6720 1 0.000805
6730 1 0.000804
7070 1 0.000804
7120 1 0.000804
7840 1 0.000805
7930 1 0.000805
8140 1 0.000805
8260 1 0.000805
8470 1 0.000805
10500 1 0.000805
11100 1 0.000805
11200 1 0.000805
11900 1 0.000805
12000 1 0.000805
13600 1 0.000805
15400 1 0.000805
15600 1 0.000805
15900 1 0.000805
16200 1 0.000805
17000 1 0.000805
18500 1 0.000805
19000 1 0.000805
19300 1 0.000805
19400 1 0.000805
19800 1 0.000805
20300 1 0.000805
21800 1 0.000805
24500 1 0.000805
25900 1 0.000805
28900 1 0.000805
29600 1 0.000805
29900 1 0.000805
30000 1 0.000805
31300 1 0.000805
34300 1 0.000805
34900 1 0.000805
35000 1 0.000805
37900 1 0.000805
39500 1 0.000805
39800 1 0.000805
40000 1 0.000805
40700 1 0.000805
42600 1 0.000805
51600 1 0.000805
55600 1 0.000805
57300 1 0.000805
57800 1 0.000805
58200 1 0.000805
59600 1 0.000805
61500 1 0.000805
61800 1 0.000805
62000 1 0.000805
62000 1 0.000805
63500 1 0.000805
63600 1 0.000805
65800 1 0.000805
66700 1 0.000805
67000 1 0.000805
67700 1 0.000805
70400 1 0.000805

CL11 ----> CL36

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No. of shared pairs: :590

CL11 ----> CL140

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No. of shared pairs: :272

CL11 ----> CL68

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No. of shared pairs: :108

CL11 ----> CL54

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No. of shared pairs: :39

CL11 ----> CL8

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No. of shared pairs: :37

CL11 ----> CL22

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No. of shared pairs: :32

CL11 ----> CL4

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No. of shared pairs: :22

CL11 ----> CL12

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No. of shared pairs: :19

CL11 ----> CL110

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No. of shared pairs: :15

CL11 ----> CL198

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No. of shared pairs: :14

CL11 ----> CL17

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No. of shared pairs: :13

CL11 ----> CL9

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No. of shared pairs: :11

CL11 ----> CL91

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No. of shared pairs: :11