Cluster no. 10

Cluster no. 10

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Cluster is part of supercluster: 1

Cluster characteristics:

size	9871
size_real	9871
ecount	737411
supercluster	1
annotations_summary	0.01% organelle/plastid
pair_completeness	0.514886433394721
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.116604194103941
satellite_probability	5.64552115013606e-15
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	6
S5	3260
S4	3310
S7	5
S9	6
S6	3260
S2	16
S1	3
S3	2

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	2	176.0	190	0.0	0	171.0	1.0	0.0	0.0
S5	176	82100.0	81900	162.0	296	80300.0	626.0	79.0	98.5
S4	190	81900.0	81500	165.0	286	80800.0	612.0	75.0	93.0
S7	0	162.0	165	0.0	2	172.0	1.5	0.0	0.5
S9	0	296.0	286	2.0	1	276.0	2.0	0.0	0.0
S6	171	80300.0	80800	172.0	276	79300.0	621.0	74.5	94.0
S2	1	626.0	612	1.5	2	621.0	5.0	0.5	1.0
S1	0	79.0	75	0.0	0	74.5	0.5	0.0	0.0
S3	0	98.5	93	0.5	0	94.0	1.0	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	5.060	0.981	1.050	0.000	0.000	0.966	0.730	0.000	0.000
S5	0.981	1.000	1.000	0.968	1.030	0.996	1.000	1.040	1.030
S4	1.050	1.000	0.996	0.986	0.997	1.000	0.982	0.983	0.973
S7	0.000	0.968	0.986	0.000	3.400	1.040	1.180	0.000	2.560
S9	0.000	1.030	0.997	3.400	0.991	0.974	0.915	0.000	0.000
S6	0.966	0.996	1.000	1.040	0.974	1.000	1.010	0.992	0.999
S2	0.730	1.000	0.982	1.180	0.915	1.010	1.050	0.861	1.370
S1	0.000	1.040	0.983	0.000	0.000	0.992	0.861	0.000	0.000
S3	0.000	1.030	0.973	2.560	0.000	0.999	1.370	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 1 1e-04

clusters with similarity:

Cluster	Number of similarity hits

20	11400
45	9530
19	6830
15	2870
109	978
66	4
2	1
49	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

45	1280	0.426
15	852	0.221
19	461	0.14
20	100	0.0401
109	95	0.0465
49	75	0.024
6	19	0.0045
14	9	0.00282
48	8	0.00313
1	6	0.00182
37	6	0.00258
47	6	0.00237
81	5	0.00256
2	4	0.00128
3	4	0.000909
86	4	0.00192
29	3	0.00115
39	3	0.00118
62	3	0.0015
67	3	0.00123
84	3	0.00129
90	3	0.00133
34	2	0.000725
41	2	0.000922
43	2	0.000705
61	2	0.000827
66	2	0.000843
72	2	0.000893
97	2	0.00114
161	2	0.00102
252	2	0.0012
6380	2	0.00126
13	1	0.000322
16	1	0.000478
25	1	0.000428
28	1	0.000382
55	1	0.000435
58	1	0.000464
63	1	0.000509
80	1	0.000431
95	1	0.00047
112	1	0.000522
132	1	0.000588
135	1	0.000555
141	1	0.000569
142	1	0.000565
145	1	0.000585
151	1	0.000498
158	1	0.000611
178	1	0.000565
186	1	0.000593
191	1	0.000624
231	1	0.000592
279	1	0.000613
369	1	0.000618
376	1	0.00062
404	1	0.000624
445	1	0.000625
589	1	0.000628
914	1	0.000629
1230	1	0.000631
12300	1	0.000632
13900	1	0.000632
18000	1	0.000632
19000	1	0.000633
25500	1	0.000632
36200	1	0.000632
54100	1	0.000632

CL10 ----> CL45

No. of shared pairs: :1284

CL10 ----> CL15

No. of shared pairs: :852

CL10 ----> CL19

No. of shared pairs: :461

CL10 ----> CL20

No. of shared pairs: :100

CL10 ----> CL109

No. of shared pairs: :95

CL10 ----> CL49

No. of shared pairs: :75

CL10 ----> CL6

No. of shared pairs: :19