Cluster no. 8

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Cluster is part of supercluster: 2

Cluster characteristics:

size 10569
size_real 10569
ecount 1732179
supercluster 2
annotations_summary 0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tcn1:Ty3-INT
0.01% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.488591549295775
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00492004920049201
satellite_probability 2.89707838193454e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 3540
S5 18
S4 21
S7 3400
S9 3530
S6 15
S2 26
S1 10
S3 7
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 185000 801.0 498.0 179000 198000 488.0 1400.0 424.0 170.0
S5 801 7.0 0.5 754 838 2.5 5.5 1.0 0.5
S4 498 0.5 5.0 473 526 2.0 2.5 1.5 0.0
S7 179000 754.0 473.0 175000 192000 432.0 1380.0 418.0 160.0
S9 198000 838.0 526.0 192000 211000 438.0 1540.0 452.0 173.0
S6 488 2.5 2.0 432 438 3.0 2.0 0.5 1.0
S2 1400 5.5 2.5 1380 1540 2.0 10.0 4.0 0.5
S1 424 1.0 1.5 418 452 0.5 4.0 2.0 0.0
S3 170 0.5 0.0 160 173 1.0 0.5 0.0 2.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 1.000 1.020 1.010 0.999 1.000 1.090 0.988 0.995 1.030
S5 1.020 2.090 0.238 0.986 0.996 1.310 0.910 0.551 0.708
S4 1.010 0.238 3.810 0.988 0.999 1.680 0.661 1.320 0.000
S7 0.999 0.986 0.988 1.000 1.000 0.995 0.999 1.010 0.997
S9 1.000 0.996 0.999 1.000 1.000 0.916 1.020 0.993 0.976
S6 1.090 1.310 1.680 0.995 0.916 2.780 0.583 0.486 2.500
S2 0.988 0.910 0.661 0.999 1.020 0.583 0.918 1.220 0.393
S1 0.995 0.551 1.320 1.010 0.993 0.486 1.220 2.040 0.000
S3 1.030 0.708 0.000 0.997 0.976 2.500 0.393 0.000 13.500

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-INT Ivana Ty1-INT 1 9.5e-05
Ivana Ty1-RT Ivana Ty1-RT 1 9.5e-05
SIRE Ty1-RT SIRE Ty1-RT 1 9.5e-05
Athila Ty3-GAG Athila Ty3-GAG 1 9.5e-05
Tcn1 Ty3-INT Tcn1 Ty3-INT 1 9.5e-05

clusters with similarity:

Cluster Number of similarity hits
5 7810
91 7580
46 3440
162 1590
18 120
11 1
54 1
2070 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
5 1420 0.386
91 514 0.208
162 419 0.181
22 60 0.0174
18 41 0.0133
11 37 0.0121
17 25 0.00729
4 15 0.00439
9 15 0.00597
12 15 0.00499
46 13 0.00477
54 13 0.0049
69 12 0.00408
51 10 0.00331
78 10 0.00344
107 10 0.00419
75 9 0.00372
83 9 0.00411
59 8 0.00268
36 7 0.00254
65 7 0.00315
157 6 0.00269
53 5 0.00211
248 5 0.00265
21 4 0.00174
32 4 0.00166
106 4 0.0018
140 4 0.00177
40 3 0.00126
79 3 0.00148
114 3 0.00139
253 3 0.0016
1940 3 0.00165
4750 3 0.00165
100 2 0.000891
136 2 0.000813
139 2 0.000963
166 2 0.00101
198 2 0.001
232 2 0.00103
235 2 0.00105
492 2 0.00109
614 2 0.00109
1780 2 0.0011
2070 2 0.0011
6350 2 0.0011
10900 2 0.0011
13000 2 0.0011
13200 2 0.0011
14800 2 0.0011
24700 2 0.0011
43600 2 0.0011
49700 2 0.0011
50600 2 0.0011
68 1 0.000384
74 1 0.000467
89 1 0.000437
102 1 0.000458
103 1 0.000484
104 1 0.000499
131 1 0.000464
150 1 0.00051
167 1 0.000494
172 1 0.000533
173 1 0.000495
182 1 0.000503
187 1 0.00054
192 1 0.000502
194 1 0.000523
203 1 0.000506
206 1 0.000501
213 1 0.00051
223 1 0.000523
246 1 0.000524
256 1 0.00053
262 1 0.000538
270 1 0.000532
319 1 0.000545
406 1 0.000546
508 1 0.000547
535 1 0.000548
585 1 0.000547
714 1 0.000549
1010 1 0.000548
1090 1 0.000548
1090 1 0.000548
1150 1 0.000549
1350 1 0.00055
1390 1 0.000549
1530 1 0.000549
1830 1 0.000549
2520 1 0.00055
2530 1 0.000549
3330 1 0.00055
4620 1 0.00055
6000 1 0.00055
6410 1 0.00055
7320 1 0.00055
8210 1 0.00055
9240 1 0.000551
9790 1 0.000551
11100 1 0.000551
12300 1 0.000551
12400 1 0.00055
12600 1 0.00055
12900 1 0.00055
13900 1 0.00055
15900 1 0.00055
18000 1 0.00055
18200 1 0.000551
18700 1 0.00055
19700 1 0.00055
20500 1 0.000551
21400 1 0.000551
22800 1 0.000551
23000 1 0.000551
24700 1 0.000551
26700 1 0.000551
27000 1 0.000551
27200 1 0.000551
27400 1 0.000551
27500 1 0.000551
28100 1 0.000551
28900 1 0.000551
34400 1 0.000551
34700 1 0.000551
36100 1 0.000551
36200 1 0.000551
36400 1 0.000551
36800 1 0.000551
40500 1 0.000551
41200 1 0.000551
41900 1 0.000551
42600 1 0.000551
42600 1 0.000551
44700 1 0.000551
46300 1 0.000551
49700 1 0.000551
51500 1 0.000551
51500 1 0.000551
54100 1 0.000551
56000 1 0.000551
58000 1 0.000551
58900 1 0.000551
59300 1 0.000551
60300 1 0.000551
61800 1 0.000551
62300 1 0.000551
62300 1 0.000551
62700 1 0.000551
66600 1 0.000551
66800 1 0.000551
68300 1 0.000551
69000 1 0.000551

CL8 ----> CL5

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No. of shared pairs: :1417

CL8 ----> CL91

image

No. of shared pairs: :514

CL8 ----> CL162

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No. of shared pairs: :419

CL8 ----> CL22

image

No. of shared pairs: :60

CL8 ----> CL18

image

No. of shared pairs: :41

CL8 ----> CL11

image

No. of shared pairs: :37

CL8 ----> CL17

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No. of shared pairs: :25

CL8 ----> CL4

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No. of shared pairs: :15

CL8 ----> CL9

image

No. of shared pairs: :15

CL8 ----> CL12

image

No. of shared pairs: :15

CL8 ----> CL46

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No. of shared pairs: :13

CL8 ----> CL54

image

No. of shared pairs: :13

CL8 ----> CL69

image

No. of shared pairs: :12

CL8 ----> CL51

image

No. of shared pairs: :10

CL8 ----> CL78

image

No. of shared pairs: :10

CL8 ----> CL107

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No. of shared pairs: :10