Cluster no. 6

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Cluster is part of supercluster: 1

Cluster characteristics:

size 11771
size_real 11771
ecount 780827
supercluster 1
annotations_summary 0.01% 45S_rDNA/25S_rDNA
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-RT
0.01% organelle/plastid
0.01% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.01% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
0.01% Class_I/LTR/Ty1_copia/Ale:Ty1-RH
pair_completeness 0.380276735459662
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0816413218927874
satellite_probability 1.69776486664788e-16
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S8 7
S5 3980
S4 3860
S7 13
S9 4
S6 3890
S2 9
S1 2
S3 5
comparative analysis - number of edges between species:
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.0 198 190 0 0 231.0 0.5 0.5 0.5
S5 198.0 94200 88000 206 138 87900.0 113.0 61.0 114.0
S4 190.0 88000 81900 236 136 82300.0 120.0 46.0 106.0
S7 0.0 206 236 1 1 212.0 0.0 0.0 0.0
S9 0.0 138 136 1 1 119.0 0.0 0.0 0.0
S6 231.0 87900 82300 212 119 83200.0 114.0 45.5 118.0
S2 0.5 113 120 0 0 114.0 0.0 0.0 0.0
S1 0.5 61 46 0 0 45.5 0.0 0.0 0.0
S3 0.5 114 106 0 0 118.0 0.0 0.0 1.0
comparative analysis - observed/expected number of edges between species
S8 S5 S4 S7 S9 S6 S2 S1 S3
S8 0.000 0.920 0.946 0.000 0.000 1.140 1.81 4.110 1.850
S5 0.920 1.000 1.000 0.903 1.000 0.996 0.94 1.150 0.972
S4 0.946 1.000 0.999 1.110 1.060 0.999 1.06 0.928 0.963
S7 0.000 0.903 1.110 1.810 3.020 0.992 0.00 0.000 0.000
S9 0.000 1.000 1.060 3.020 5.020 0.926 0.00 0.000 0.000
S6 1.140 0.996 0.999 0.992 0.926 1.010 1.01 0.913 1.060
S2 1.810 0.940 1.060 0.000 0.000 1.010 0.00 0.000 0.000
S1 4.110 1.150 0.928 0.000 0.000 0.913 0.00 0.000 0.000
S3 1.850 0.972 0.963 0.000 0.000 1.060 0.00 0.000 6.770

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
25S_rDNA 25S_rDNA 1 8.5e-05
plastid plastid 1 8.5e-05
Ale Ty1-RH Ale Ty1-RH 1 8.5e-05
Tekay Ty3-INT Tekay Ty3-INT 1 8.5e-05
TatV Ty3-RT TatV Ty3-RT 1 8.5e-05
Tekay Ty3-RT Tekay Ty3-RT 1 8.5e-05
TatV Ty3-aRH TatV Ty3-aRH 1 8.5e-05

clusters with similarity:

Cluster Number of similarity hits
3 11600
15 9260
39 2470
13 1360
33 310
45 131
48 14
220 14
378 9
19 6
20 1
47 1
117 1
208 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
15 1840 0.373
3 1370 0.252
13 249 0.0598
39 141 0.0392
33 136 0.0309
45 66 0.0162
19 43 0.00988
20 26 0.00732
10 19 0.0045
378 19 0.00712
1 17 0.0039
48 17 0.0047
14 11 0.00259
220 11 0.004
67 10 0.00286
80 10 0.00296
28 9 0.00245
56 9 0.00276
92 9 0.00291
34 8 0.00209
55 8 0.00238
84 8 0.00236
88 8 0.00243
99 8 0.00253
52 7 0.00219
66 7 0.00204
16 6 0.0019
29 6 0.00163
31 6 0.00177
105 6 0.00189
117 6 0.00199
37 5 0.00148
43 5 0.00128
61 5 0.00144
62 5 0.00163
71 5 0.0014
111 5 0.00177
145 5 0.0018
26 4 0.00112
47 4 0.00111
81 4 0.00133
87 4 0.00123
146 4 0.00126
186 4 0.00146
2 3 0.000716
25 3 0.000883
49 3 0.000717
74 3 0.00101
82 3 0.000916
90 3 0.000906
93 3 0.00091
94 3 0.00101
95 3 0.000941
126 3 0.000983
142 3 0.00106
195 3 0.00109
41 2 0.000619
60 2 0.000551
63 2 0.00066
72 2 0.000606
89 2 0.000642
97 2 0.000709
109 2 0.000644
123 2 0.000622
128 2 0.000613
130 2 0.000656
132 2 0.000724
138 2 0.000703
141 2 0.000709
159 2 0.00068
181 2 0.000663
185 2 0.000685
208 2 0.000707
211 2 0.000709
231 2 0.000727
8350 2 0.000756
29300 2 0.000757
46000 2 0.000757
57400 2 0.000757
60200 2 0.000757
24 1 0.000307
35 1 0.000276
73 1 0.000309
76 1 0.000314
86 1 0.000318
101 1 0.00032
112 1 0.000336
118 1 0.000323
119 1 0.000341
120 1 0.000329
133 1 0.000368
135 1 0.000349
144 1 0.000352
149 1 0.000362
151 1 0.000326
155 1 0.000352
158 1 0.000371
179 1 0.000344
190 1 0.000368
230 1 0.000358
279 1 0.000371
317 1 0.000375
328 1 0.000375
345 1 0.000374
370 1 0.000375
383 1 0.000375
423 1 0.000377
434 1 0.000377
461 1 0.000377
505 1 0.000376
541 1 0.000375
722 1 0.000377
900 1 0.000377
942 1 0.000378
1180 1 0.000378
1610 1 0.000378
1630 1 0.000378
1760 1 0.000378
2110 1 0.000378
2370 1 0.000378
2440 1 0.000378
2860 1 0.000378
3440 1 0.000378
3510 1 0.000378
3830 1 0.000378
4090 1 0.000378
4280 1 0.000378
4420 1 0.000378
4480 1 0.000378
4560 1 0.000378
5400 1 0.000378
5540 1 0.000378
5570 1 0.000378
6080 1 0.000378
6380 1 0.000378
6700 1 0.000378
6720 1 0.000378
8120 1 0.000378
8190 1 0.000378
8480 1 0.000378
8510 1 0.000378
8590 1 0.000378
9130 1 0.000378
9950 1 0.000378
10200 1 0.000378
11300 1 0.000378
11800 1 0.000378
12000 1 0.000378
12000 1 0.000378
12500 1 0.000378
12700 1 0.000378
12900 1 0.000378
13900 1 0.000378
14200 1 0.000378
14400 1 0.000378
15700 1 0.000378
16000 1 0.000378
16300 1 0.000378
17000 1 0.000378
18000 1 0.000378
18100 1 0.000378
19400 1 0.000378
20000 1 0.000378
20600 1 0.000378
22100 1 0.000378
22200 1 0.000378
24000 1 0.000378
24100 1 0.000378
27300 1 0.000378
29800 1 0.000378
31200 1 0.000378
32600 1 0.000378
32600 1 0.000378
33000 1 0.000378
33300 1 0.000378
34800 1 0.000378
35800 1 0.000378
37100 1 0.000378
37300 1 0.000378
38100 1 0.000378
38900 1 0.000378
41100 1 0.000378
41200 1 0.000378
41200 1 0.000378
43600 1 0.000378
44000 1 0.000378
44300 1 0.000378
46600 1 0.000378
50400 1 0.000378
50600 1 0.000378
51900 1 0.000378
52800 1 0.000378
52900 1 0.000378
55100 1 0.000378
56100 1 0.000378
57900 1 0.000378
60100 1 0.000378
62900 1 0.000378
62900 1 0.000378
65800 1 0.000378
66600 1 0.000378
67700 1 0.000378
68200 1 0.000378
70100 1 0.000378
70400 1 0.000378
70800 1 0.000378

CL6 ----> CL15

image

No. of shared pairs: :1835

CL6 ----> CL3

image

No. of shared pairs: :1374

CL6 ----> CL13

image

No. of shared pairs: :249

CL6 ----> CL39

image

No. of shared pairs: :141

CL6 ----> CL33

image

No. of shared pairs: :136

CL6 ----> CL45

image

No. of shared pairs: :66

CL6 ----> CL19

image

No. of shared pairs: :43

CL6 ----> CL20

image

No. of shared pairs: :26

CL6 ----> CL10

image

No. of shared pairs: :19

CL6 ----> CL378

image

No. of shared pairs: :19

CL6 ----> CL1

image

No. of shared pairs: :17

CL6 ----> CL48

image

No. of shared pairs: :17

CL6 ----> CL14

image

No. of shared pairs: :11

CL6 ----> CL220

image

No. of shared pairs: :11

CL6 ----> CL67

image

No. of shared pairs: :10

CL6 ----> CL80

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No. of shared pairs: :10