Cluster no. 5

Cluster no. 5

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Cluster is part of supercluster: 2

Cluster characteristics:

size	11847
size_real	11847
ecount	1740758
supercluster	2
annotations_summary	0.02% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-CHDII 0.01% Class_II/Subclass_2/Helitron:Helitron-HEL1
pair_completeness	0.522163690093794
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00219464843420275
satellite_probability	2.0897667525813e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	3900
S5	26
S4	21
S7	3880
S9	3890
S6	35
S2	39
S1	30
S3	33

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	189000	890.0	1190.0	190000	189000	1750.0	1190.0	506.0	466.0
S5	890	9.0	3.5	904	918	8.5	7.0	8.0	5.0
S4	1190	3.5	6.0	1180	1200	12.0	5.0	3.5	3.0
S7	190000	904.0	1180.0	191000	190000	1730.0	1250.0	514.0	510.0
S9	189000	918.0	1200.0	190000	188000	1760.0	1230.0	524.0	492.0
S6	1750	8.5	12.0	1730	1760	12.0	9.5	4.5	4.5
S2	1190	7.0	5.0	1250	1230	9.5	26.0	17.5	47.0
S1	506	8.0	3.5	514	524	4.5	17.5	25.0	48.5
S3	466	5.0	3.0	510	492	4.5	47.0	48.5	91.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	1.000	0.981	1.000	1.000	1.000	1.000	0.952	0.930	0.849
S5	0.981	2.070	0.614	0.992	1.010	1.020	1.170	3.060	1.900
S4	1.000	0.614	0.803	0.989	1.010	1.090	0.639	1.020	0.868
S7	1.000	0.992	0.989	0.999	1.000	0.988	1.000	0.941	0.923
S9	1.000	1.010	1.010	1.000	0.998	1.010	0.989	0.965	0.899
S6	1.000	1.020	1.090	0.988	1.010	0.746	0.827	0.897	0.888
S2	0.952	1.170	0.639	1.000	0.989	0.827	3.170	4.880	13.000
S1	0.930	3.060	1.020	0.941	0.965	0.897	4.880	16.000	30.700
S3	0.849	1.900	0.868	0.923	0.899	0.888	13.000	30.700	57.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

Helitron Helitron-HEL1 Helitron Helitron-HEL1 1 8.4e-05

CRM Ty3-CHDII CRM Ty3-CHDII 2 1.7e-04

clusters with similarity:

Cluster	Number of similarity hits

78	27000
27	8680
8	7810
107	3420
69	2860
18	496
157	264
248	48
256	10
284	7
1530	2
22	1
36	1
58	1
643	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

8	1420	0.386
78	943	0.32
107	516	0.212
69	72	0.0241
157	63	0.0277
91	35	0.0139
22	29	0.00832
256	19	0.00983
4	17	0.00492
17	15	0.00432
12	14	0.00459
284	14	0.00741
18	11	0.00353
53	11	0.00455
58	11	0.00452
11	9	0.0029
54	9	0.00334
9	7	0.00274
106	7	0.00309
51	6	0.00196
643	6	0.00322
27	3	0.0011
36	3	0.00107
162	3	0.00127
2320	3	0.00161
68	2	0.000755
75	2	0.000811
83	2	0.000895
104	2	0.000977
150	2	0.000999
182	2	0.000984
247	2	0.00105
2070	2	0.00107
5190	2	0.00107
10000	2	0.00107
11000	2	0.00107
16900	2	0.00107
32900	2	0.00107
37800	2	0.00107
58500	2	0.00107
64600	2	0.00107
7	1	0.000303
20	1	0.000361
21	1	0.000428
32	1	0.000408
45	1	0.000304
46	1	0.000361
59	1	0.00033
79	1	0.000483
100	1	0.000437
102	1	0.000449
103	1	0.000474
114	1	0.000453
124	1	0.00048
131	1	0.000455
136	1	0.000399
140	1	0.000434
173	1	0.000484
186	1	0.000509
192	1	0.000491
198	1	0.00049
221	1	0.000508
235	1	0.000515
248	1	0.000518
261	1	0.000524
263	1	0.000515
265	1	0.000521
320	1	0.000525
987	1	0.000535
1260	1	0.000536
1530	1	0.000536
2350	1	0.000537
5400	1	0.000537
5540	1	0.000537
6350	1	0.000537
9440	1	0.000537
9760	1	0.000537
9790	1	0.000537
12300	1	0.000537
12900	1	0.000537
13000	1	0.000537
13200	1	0.000537
14800	1	0.000537
16200	1	0.000538
16400	1	0.000538
17200	1	0.000537
18700	1	0.000537
19300	1	0.000537
21400	1	0.000537
27100	1	0.000537
27200	1	0.000537
27500	1	0.000537
28400	1	0.000537
28700	1	0.000537
28900	1	0.000537
34200	1	0.000537
36200	1	0.000537
46700	1	0.000537
54300	1	0.000537
56400	1	0.000537
62700	1	0.000537
68300	1	0.000537
69900	1	0.000537
70700	1	0.000537

CL5 ----> CL8

No. of shared pairs: :1417

CL5 ----> CL78

No. of shared pairs: :943

CL5 ----> CL107

No. of shared pairs: :516

CL5 ----> CL69

No. of shared pairs: :72

CL5 ----> CL157

No. of shared pairs: :63

CL5 ----> CL91

No. of shared pairs: :35

CL5 ----> CL22

No. of shared pairs: :29

CL5 ----> CL256

No. of shared pairs: :19

CL5 ----> CL4

No. of shared pairs: :17

CL5 ----> CL17

No. of shared pairs: :15

CL5 ----> CL12

No. of shared pairs: :14

CL5 ----> CL284

No. of shared pairs: :14

CL5 ----> CL18

No. of shared pairs: :11

CL5 ----> CL53

No. of shared pairs: :11

CL5 ----> CL58

No. of shared pairs: :11