Cluster no. 2

Cluster no. 2

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Cluster is part of supercluster: 1

Cluster characteristics:

size	14139
size_real	14139
ecount	1919605
supercluster	1
annotations_summary	0.01% organelle/plastid 0.01% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
pair_completeness	0.641016713091922
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.00643609873399816
satellite_probability	2.63699184809533e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S8	12
S5	4710
S4	4650
S7	11
S9	9
S6	4720
S2	20
S1	10
S3	5

comparative analysis - number of edges between species:

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	2.0	306	288	0.5	0.5	309	0.5	0.0	0.0
S5	306.0	209000	211000	766.0	452.0	210000	668.0	318.0	226.0
S4	288.0	211000	213000	744.0	464.0	213000	688.0	344.0	235.0
S7	0.5	766	744	4.0	3.0	772	0.5	1.0	0.0
S9	0.5	452	464	3.0	0.0	479	0.0	1.0	0.0
S6	309.0	210000	213000	772.0	479.0	213000	610.0	312.0	239.0
S2	0.5	668	688	0.5	0.0	610	6.0	0.5	1.5
S1	0.0	318	344	1.0	1.0	312	0.5	1.0	0.0
S3	0.0	226	235	0.0	0.0	239	1.5	0.0	0.0

comparative analysis - observed/expected number of edges between species

	S8	S5	S4	S7	S9	S6	S2	S1	S3
S8	4.680	1.020	0.954	0.463	0.757	1.020	0.536	0.000	0.000
S5	1.020	1.000	1.000	1.020	0.979	0.998	1.030	0.986	0.979
S4	0.954	1.000	1.000	0.974	0.996	1.000	1.040	1.060	1.000
S7	0.463	1.020	0.974	1.460	1.800	1.010	0.212	0.857	0.000
S9	0.757	0.979	0.996	1.800	0.000	1.030	0.000	1.400	0.000
S6	1.020	0.998	1.000	1.010	1.030	1.000	0.928	0.958	1.020
S2	0.536	1.030	1.040	0.212	0.000	0.928	2.950	0.497	2.080
S1	0.000	0.986	1.060	0.857	1.400	0.958	0.497	2.010	0.000
S3	0.000	0.979	1.000	0.000	0.000	1.020	2.080	0.000	0.000

protein domains:

protein domains:

Reads annotation summary

cl_string domain Freq proportion

plastid plastid 2 1.4e-04

Ivana Ty1-RT Ivana Ty1-RT 1 7.1e-05

clusters with similarity:

Cluster	Number of similarity hits

33	26800
44	5090
19	1080
26	919
185	188
20	19
1	1
3	1
10	1
39	1

clusters connected through mates:

Cluster	Number of shared read pairs	k

33	1230	0.371
44	834	0.347
26	524	0.212
185	43	0.0236
48	36	0.0143
3	18	0.00412
19	12	0.00369
67	11	0.00458
14	8	0.00254
29	6	0.00232
39	5	0.002
84	5	0.00218
10	4	0.00128
25	4	0.00174
37	4	0.00175
95	4	0.00191
1	3	0.000919
6	3	0.000716
15	3	0.000786
34	3	0.0011
63	3	0.00155
86	3	0.00147
90	3	0.00135
119	3	0.00163
126	3	0.00153
257	3	0.00188
28	2	0.000775
35	2	0.000793
66	2	0.000855
74	2	0.00107
109	2	0.000996
142	2	0.00115
186	2	0.00121
360	2	0.00128
14400	2	0.00129
16900	2	0.00129
21400	2	0.00129
20	1	0.000407
24	1	0.000462
43	1	0.000357
45	1	0.000336
47	1	4e-04
49	1	0.000324
56	1	0.000461
61	1	0.000419
62	1	0.000509
68	1	0.000428
72	1	0.000454
73	1	0.000467
80	1	0.000437
82	1	0.000459
88	1	0.000455
94	1	0.000531
97	1	0.000579
99	1	0.000483
101	1	0.000494
105	1	0.000483
115	1	0.000446
132	1	6e-04
135	1	0.000565
145	1	0.000597
149	1	6e-04
160	1	0.000631
165	1	0.000596
169	1	0.000583
237	1	0.000617
255	1	0.000631
302	1	0.000634
313	1	0.000641
376	1	0.000633
404	1	0.000637
804	1	0.000644
1060	1	0.000643
1220	1	0.000643
3110	1	0.000645
3870	1	0.000646
4780	1	0.000645
6140	1	0.000646
6600	1	0.000646
6710	1	0.000646
12500	1	0.000646
14300	1	0.000646
37300	1	0.000646
39000	1	0.000646
43300	1	0.000646
59700	1	0.000646
61900	1	0.000646
67500	1	0.000646

CL2 ----> CL33

No. of shared pairs: :1226

CL2 ----> CL44

No. of shared pairs: :834

CL2 ----> CL26

No. of shared pairs: :524

CL2 ----> CL185

No. of shared pairs: :43

CL2 ----> CL48

No. of shared pairs: :36

CL2 ----> CL3

No. of shared pairs: :18

CL2 ----> CL19

No. of shared pairs: :12

CL2 ----> CL67

No. of shared pairs: :11