Cluster no. 298

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Cluster is part of supercluster: 205

Cluster characteristics:

size 69
size_real 69
ecount 185
supercluster 205
annotations_summary
pair_completeness 0.169491525423729
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0144927536231884
satellite_probability 8.12169207732869e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 17
S4 27
S6 25
comparative analysis - number of edges between species:
S5 S4 S6
S5 9.0 15 14.5
S4 15.0 28 29.0
S6 14.5 29 31.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.120 1.000 0.935
S4 1.000 0.999 1.000
S6 0.935 1.000 1.030

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
27 15 0.0163
848 5 0.152
5500 2 0.0755
8530 2 0.0769
10300 2 0.0769
11600 2 0.0769
12700 2 0.0769
24300 2 0.0784
7 1 0.000461
708 1 0.0308
2920 1 0.0377
3000 1 0.0364
4200 1 0.037
5940 1 0.0377
16700 1 0.0392
40100 1 0.0392
40400 1 0.0392

CL298 ----> CL27

image

No. of shared pairs: :15