Cluster no. 297

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Cluster is part of supercluster: 204

Cluster characteristics:

size 69
size_real 69
ecount 277
supercluster 204
annotations_summary 2.90% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
1.45% Class_I/LTR/Ty1_copia/SIRE:Ty1-RT
pair_completeness 0.533333333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0153846153846154
satellite_probability 1.00178308654116e-19
consensus None
TAREAN_annotation Other
orientation_score 0.993174061433447

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 16
S4 24
S6 29
comparative analysis - number of edges between species:
S5 S4 S6
S5 17.0 26.0 27.5
S4 26.0 33.0 45.5
S6 27.5 45.5 45.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.000 1.030 0.969
S4 1.030 0.885 1.080
S6 0.969 1.080 0.947

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ivana Ty1-RT Ivana Ty1-RT 2 0.029
SIRE Ty1-RT SIRE Ty1-RT 1 0.014

clusters connected through mates:

Cluster Number of shared
read pairs		 k
141 3 0.0335
1320 2 0.16
1450 2 0.154
8730 2 0.167
23300 2 0.174
299 1 0.0339
2160 1 0.0741
2200 1 0.08
23600 1 0.087
32100 1 0.087