Cluster no. 296

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Cluster is part of supercluster: 203

Cluster characteristics:

size 71
size_real 71
ecount 184
supercluster 203
annotations_summary 26.76% Class_I/LINE:LINE-RT
pair_completeness 0.314814814814815
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0140845070422535
satellite_probability 1.17429072542671e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 22
S4 31
S6 18
comparative analysis - number of edges between species:
S5 S4 S6
S5 23.0 23.5 13.0
S4 23.5 30.0 20.5
S6 13.0 20.5 17.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.200 0.982 0.796
S4 0.982 1.010 1.010
S6 0.796 1.010 1.230

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 19 0.27

clusters connected through mates:

Cluster Number of shared
read pairs		 k
186 11 0.172
570 7 0.255
308 5 0.132
954 4 0.178
10 1 0.000445
478 1 0.0364
3870 1 0.0476
42800 1 0.0513
45100 1 0.0513

CL296 ----> CL186

image

No. of shared pairs: :11