Cluster no. 295
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Cluster is part of supercluster: 202
Cluster characteristics:
| size |
72 |
| size_real |
72 |
| ecount |
204 |
| supercluster |
202 |
| annotations_summary |
|
| pair_completeness |
0.531914893617021 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0138888888888889 |
| satellite_probability |
6.30293069200862e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
18 |
| S4 |
18 |
| S6 |
36 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
12 |
15.0 |
29.0 |
| S4 |
15 |
15.0 |
26.5 |
| S6 |
29 |
26.5 |
36.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.781 |
0.967 |
1.150 |
| S4 |
0.967 |
0.959 |
1.050 |
| S6 |
1.150 |
1.050 |
0.877 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 528 |
2 |
0.121 |
| 1470 |
2 |
0.129 |
| 9860 |
2 |
0.16 |
| 43500 |
2 |
0.167 |
| 16 |
1 |
0.000931 |
| 54 |
1 |
0.000984 |
| 8730 |
1 |
0.08 |
| 46800 |
1 |
0.0833 |
| 47500 |
1 |
0.0833 |
|