Cluster no. 293
Go back to cluster table
Cluster is part of supercluster: 200
Cluster characteristics:
| size |
72 |
| size_real |
72 |
| ecount |
150 |
| supercluster |
200 |
| annotations_summary |
|
| pair_completeness |
0.333333333333333 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0138888888888889 |
| satellite_probability |
1.17931272802845e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
20 |
| S4 |
22 |
| S6 |
30 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
13.0 |
11 |
13.5 |
| S4 |
11.0 |
20 |
25.0 |
| S6 |
13.5 |
25 |
18.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.390 |
0.786 |
0.956 |
| S4 |
0.786 |
0.957 |
1.190 |
| S6 |
0.956 |
1.190 |
0.846 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 306 |
8 |
0.211 |
| 16 |
3 |
0.00277 |
| 54 |
2 |
0.00195 |
| 1620 |
1 |
0.0455 |
| 4930 |
1 |
0.05 |
| 5820 |
1 |
0.05 |
| 5830 |
1 |
0.05 |
| 10200 |
1 |
0.0513 |
| 12500 |
1 |
0.0513 |
| 30300 |
1 |
0.0526 |
| 44500 |
1 |
0.0526 |
|