Cluster no. 289

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Cluster is part of supercluster: 196

Cluster characteristics:

size 74
size_real 74
ecount 137
supercluster 196
annotations_summary
pair_completeness 0.193548387096774
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0135135135135135
satellite_probability 8.87680651322255e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 27
S4 22
S6 25
comparative analysis - number of edges between species:
S5 S4 S6
S5 22.0 13.0 21.5
S4 13.0 5.0 11.5
S6 21.5 11.5 18.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.944 1.070 1.020
S4 1.070 0.787 1.050
S6 1.020 1.050 0.948

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
28 13 0.00776
15 4 0.00403
1010 3 0.0952
2350 1 0.0351
2700 1 0.0351
31600 1 0.0385
33500 1 0.0385
40400 1 0.0385
42000 1 0.0385
44500 1 0.0385
44600 1 0.0385

CL289 ----> CL28

image

No. of shared pairs: :13