Cluster no. 287
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Cluster is part of supercluster: 194
Cluster characteristics:
| size |
74 |
| size_real |
74 |
| ecount |
142 |
| supercluster |
194 |
| annotations_summary |
|
| pair_completeness |
0.275862068965517 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0135135135135135 |
| satellite_probability |
1.14058372808344e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
20 |
| S4 |
32 |
| S6 |
22 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
6.0 |
19.5 |
7.5 |
| S4 |
19.5 |
42.0 |
14.5 |
| S6 |
7.5 |
14.5 |
11.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.782 |
1.100 |
0.978 |
| S4 |
1.100 |
1.030 |
0.821 |
| S6 |
0.978 |
0.821 |
1.430 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 354 |
5 |
0.133 |
| 392 |
2 |
0.0526 |
| 10 |
1 |
0.000445 |
| 32 |
1 |
0.000746 |
| 40 |
1 |
0.00114 |
| 90 |
1 |
0.00197 |
| 150 |
1 |
0.00356 |
| 168 |
1 |
0.00639 |
| 749 |
1 |
0.0339 |
| 1130 |
1 |
0.0357 |
| 7050 |
1 |
0.0455 |
| 13500 |
1 |
0.0444 |
|