Cluster no. 284

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Cluster is part of supercluster: 191

Cluster characteristics:

size 75
size_real 75
ecount 191
supercluster 191
annotations_summary 28.00% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-GAG
1.33% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Athila:Ty3-GAG
pair_completeness 0.293103448275862
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0133333333333333
satellite_probability 1.1552035631474e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 27
S4 16
S6 32
comparative analysis - number of edges between species:
S5 S4 S6
S5 26.0 17.5 29
S4 17.5 8.0 17
S6 29.0 17.0 30
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.945 1.080 1.010
S4 1.080 0.846 1.010
S6 1.010 1.010 0.992

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Athila Ty3-GAG Athila Ty3-GAG 1 0.013
TatV Ty3-GAG TatV Ty3-GAG 21 0.280

clusters connected through mates:

Cluster Number of shared
read pairs		 k
406 14 0.384
868 9 0.31
7310 3 0.133
1250 2 0.0816
359 1 0.0308
452 1 0.0339
959 1 0.0377
19500 1 0.0465
36300 1 0.0465

CL284 ----> CL406

image

No. of shared pairs: :14