Cluster no. 281

Go back to cluster table

Cluster is part of supercluster: 188

Cluster characteristics:

size 76
size_real 76
ecount 239
supercluster 188
annotations_summary
pair_completeness 0.266666666666667
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.263157894736842
satellite_probability 6.80056771656739e-11
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 25
S4 27
S6 24
comparative analysis - number of edges between species:
S5 S4 S6
S5 24 26.0 22.0
S4 26 26.0 31.5
S6 22 31.5 30.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.110 1.030 0.875
S4 1.030 0.891 1.080
S6 0.875 1.080 1.030

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
9 16 0.0138
12400 2 0.0851
49 1 0.000867
83 1 0.000897
84 1 0.00138
113 1 0.00219
132 1 0.00571
8930 1 0.0426
14100 1 0.0435
31700 1 0.0435

CL281 ----> CL9

image

No. of shared pairs: :16