Cluster no. 280
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Cluster is part of supercluster: 187
Cluster characteristics:
| size |
77 |
| size_real |
77 |
| ecount |
359 |
| supercluster |
187 |
| annotations_summary |
|
| pair_completeness |
0.711111111111111 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.012987012987013 |
| satellite_probability |
1.24154883703084e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
28 |
| S4 |
28 |
| S6 |
21 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
37 |
47 |
41 |
| S4 |
47 |
51 |
35 |
| S6 |
41 |
35 |
25 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.85 |
1.010 |
1.170 |
| S4 |
1.01 |
1.040 |
0.935 |
| S6 |
1.17 |
0.935 |
0.880 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 471 |
5 |
0.476 |
| 5390 |
2 |
0.235 |
| 39900 |
2 |
0.267 |
| 454 |
1 |
0.0714 |
| 1120 |
1 |
0.0952 |
|