Cluster no. 279

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Cluster is part of supercluster: 186

Cluster characteristics:

size	77
size_real	77
ecount	204
supercluster	186
annotations_summary	49.35% Class_I/pararetrovirus:PARA-RT 7.79% Class_I/LTR/Ty3_gypsy/chromovirus/chromo-outgroup:Ty3-RT 6.49% Class_I/LTR/Ty3_gypsy/chromovirus/Chlamyvir:Ty3-RT 6.49% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-RT 2.60% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT 1.30% Class_I/LTR/Ty3_gypsy/chromovirus/Galadriel:Ty3-RT
pair_completeness	0.604166666666667
pbs_score	None
TR_score	None
TR_monomer_length	None
loop_index	0.012987012987013
satellite_probability	3.78354838386418e-21
consensus	None
TAREAN_annotation	Other
orientation_score	1

comparative analysis:

Comparative analysis - species read counts:

Species	Read count
S5	34
S4	29
S6	14

comparative analysis - number of edges between species:

	S5	S4	S6
S5	38.0	31.5	19.5
S4	31.5	31.0	14.0
S6	19.5	14.0	5.0

comparative analysis - observed/expected number of edges between species

	S5	S4	S6
S5	0.979	0.944	1.160
S4	0.944	1.080	0.970
S6	1.160	0.970	0.688

protein domains:

Reads annotation summary

cl_string domain Freq proportion

pararetrovirus PARA-RT pararetrovirus PARA-RT 38 0.494

CRM Ty3-RT CRM Ty3-RT 5 0.065

Chlamyvir Ty3-RT Chlamyvir Ty3-RT 5 0.065

Galadriel Ty3-RT Galadriel Ty3-RT 1 0.013

Reina Ty3-RT Reina Ty3-RT 2 0.026

chromo-outgroup Ty3-RT chromo-outgroup Ty3-RT 6 0.078

clusters connected through mates:

Cluster	Number of shared read pairs	k

384	7	0.389
564	6	0.364
13	1	0.000689