Cluster no. 278

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Cluster is part of supercluster: 185

Cluster characteristics:

size 77
size_real 77
ecount 185
supercluster 185
annotations_summary
pair_completeness 0.184615384615385
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.012987012987013
satellite_probability 8.5036589366246e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 20
S4 31
S6 26
comparative analysis - number of edges between species:
S5 S4 S6
S5 8 15.0 18.0
S4 15 29.0 26.5
S6 18 26.5 29.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.88 0.960 1.110
S4 0.96 1.080 0.946
S6 1.11 0.946 0.993

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
72 11 0.0108
449 6 0.164
945 2 0.0615
5740 2 0.0702
27 1 0.00108
30 1 0.000609
4440 1 0.0345
22900 1 0.0364
36100 1 0.0364
38900 1 0.0364

CL278 ----> CL72

image

No. of shared pairs: :11