Cluster no. 277

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Cluster is part of supercluster: 184

Cluster characteristics:

size 78
size_real 78
ecount 219
supercluster 184
annotations_summary 60.26% Class_I/LINE:LINE-RT
pair_completeness 0.5
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0128205128205128
satellite_probability 7.48572094908218e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 26
S4 25
S6 27
comparative analysis - number of edges between species:
S5 S4 S6
S5 21.0 22.5 21.5
S4 22.5 19.0 30.5
S6 21.5 30.5 30.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.090 1.050 0.883
S4 1.050 0.803 1.130
S6 0.883 1.130 0.977

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 47 0.6

clusters connected through mates:

Cluster Number of shared
read pairs		 k
308 10 0.308
736 7 0.368
9700 3 0.207
633 1 0.0476

CL277 ----> CL308

image

No. of shared pairs: :10