Cluster no. 275
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Cluster is part of supercluster: 182
Cluster characteristics:
| size |
79 |
| size_real |
79 |
| ecount |
259 |
| supercluster |
182 |
| annotations_summary |
|
| pair_completeness |
0.253968253968254 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0126582278481013 |
| satellite_probability |
1.07807224686137e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
27 |
| S4 |
17 |
| S6 |
35 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
26.0 |
22.5 |
29.5 |
| S4 |
22.5 |
25.0 |
27.5 |
| S6 |
29.5 |
27.5 |
49.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.110 |
0.996 |
0.924 |
| S4 |
0.996 |
1.150 |
0.896 |
| S6 |
0.924 |
0.896 |
1.130 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 6650 |
2 |
0.0784 |
| 9 |
1 |
0.000864 |
| 19 |
1 |
0.000653 |
| 42 |
1 |
0.00106 |
| 45 |
1 |
0.000968 |
| 143 |
1 |
0.00473 |
| 6880 |
1 |
0.0392 |
| 9670 |
1 |
0.04 |
| 30300 |
1 |
0.0408 |
| 31900 |
1 |
0.0408 |
| 40600 |
1 |
0.0408 |
|