Cluster no. 274

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Cluster is part of supercluster: 181

Cluster characteristics:

size 79
size_real 79
ecount 345
supercluster 181
annotations_summary
pair_completeness 0.196969696969697
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.240506329113924
satellite_probability 1.0837592136881e-11
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 17
S4 26
S6 36
comparative analysis - number of edges between species:
S5 S4 S6
S5 10 25.0 23.0
S4 25 56.0 61.5
S6 23 61.5 60.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.030 1.040 0.947
S4 1.040 0.951 1.030
S6 0.947 1.030 0.991

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
68 13 0.0112
1610 4 0.131
196 3 0.033
773 1 0.0294
4150 1 0.0357
6110 1 0.0351
6270 1 0.0351
11000 1 0.0357
16500 1 0.0364
17600 1 0.0364
22700 1 0.0364
29900 1 0.0364
34400 1 0.0364
40300 1 0.0364
41200 1 0.0364

CL274 ----> CL68

image

No. of shared pairs: :13