Cluster no. 272

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Cluster is part of supercluster: 179

Cluster characteristics:

size 83
size_real 83
ecount 202
supercluster 179
annotations_summary 1.20% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-RT
pair_completeness 0.456140350877193
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0120481927710843
satellite_probability 9.01795932205422e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 28
S4 34
S6 21
comparative analysis - number of edges between species:
S5 S4 S6
S5 20.0 33.5 18
S4 33.5 35.0 15
S6 18.0 15.0 14
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.79 1.130 1.080
S4 1.13 1.010 0.772
S6 1.08 0.772 1.280

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-RT Reina Ty3-RT 1 0.012

clusters connected through mates:

Cluster Number of shared
read pairs		 k
382 10 0.364
2150 3 0.162
4210 3 0.167
874 2 0.105
7820 2 0.118
37000 2 0.121
10 1 0.000446
30 1 0.000613
11000 1 0.0588

CL272 ----> CL382

image

No. of shared pairs: :10