Cluster no. 271
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Cluster is part of supercluster: 178
Cluster characteristics:
| size |
83 |
| size_real |
83 |
| ecount |
322 |
| supercluster |
178 |
| annotations_summary |
|
| pair_completeness |
0.482142857142857 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0120481927710843 |
| satellite_probability |
8.26675057188842e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
24 |
| S4 |
28 |
| S6 |
31 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
29.0 |
37.5 |
30.5 |
| S4 |
37.5 |
41.0 |
39.0 |
| S6 |
30.5 |
39.0 |
38.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.992 |
1.060 |
0.942 |
| S4 |
1.060 |
0.956 |
0.994 |
| S6 |
0.942 |
0.994 |
1.060 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 312 |
7 |
0.197 |
| 2920 |
3 |
0.171 |
| 8230 |
2 |
0.125 |
| 32800 |
2 |
0.129 |
| 33400 |
2 |
0.129 |
| 2220 |
1 |
0.0571 |
| 5440 |
1 |
0.0645 |
| 9550 |
1 |
0.0667 |
| 11800 |
1 |
0.0625 |
| 19400 |
1 |
0.0645 |
| 23100 |
1 |
0.0645 |
| 33400 |
1 |
0.0645 |
| 39400 |
1 |
0.0645 |
|