Cluster no. 270

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Cluster is part of supercluster: 177

Cluster characteristics:

size 83
size_real 83
ecount 177
supercluster 177
annotations_summary 24.10% Class_I/LTR/Ty1_copia/Angela:Ty1-INT
16.87% Class_I/LTR/Ty1_copia/Angela:Ty1-RT
1.20% Class_I/LTR/Ty1_copia/TAR:Ty1-INT
1.20% Class_I/LTR/Ty1_copia/Ikeros:Ty1-RT
1.20% Class_I/LTR/Ty1_copia/Ivana:Ty1-RT
pair_completeness 0.482142857142857
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0120481927710843
satellite_probability 8.26675057188842e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 21
S4 35
S6 27
comparative analysis - number of edges between species:
S5 S4 S6
S5 13.0 20.0 16.5
S4 20.0 25.0 25.5
S6 16.5 25.5 15.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.939 1.01 1.040
S4 1.010 0.89 1.120
S6 1.040 1.12 0.817

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Angela Ty1-INT Angela Ty1-INT 20 0.241
TAR Ty1-INT TAR Ty1-INT 1 0.012
Angela Ty1-RT Angela Ty1-RT 14 0.169
Ikeros Ty1-RT Ikeros Ty1-RT 1 0.012
Ivana Ty1-RT Ivana Ty1-RT 1 0.012

clusters connected through mates:

Cluster Number of shared
read pairs		 k
990 8 0.364
2610 2 0.111
502 1 0.0435
1220 1 0.05
5810 1 0.0606
15500 1 0.0645
48000 1 0.0645