Cluster no. 269
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Cluster is part of supercluster: 176
Cluster characteristics:
| size |
84 |
| size_real |
84 |
| ecount |
200 |
| supercluster |
176 |
| annotations_summary |
|
| pair_completeness |
0.423728813559322 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0119047619047619 |
| satellite_probability |
1.0345154302985e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
27 |
| S4 |
28 |
| S6 |
29 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
22.0 |
21 |
25.5 |
| S4 |
21.0 |
15 |
26.0 |
| S6 |
25.5 |
26 |
18.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.938 |
0.989 |
1.070 |
| S4 |
0.989 |
0.780 |
1.210 |
| S6 |
1.070 |
1.210 |
0.745 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 80 |
4 |
0.0199 |
| 1880 |
3 |
0.14 |
| 244 |
2 |
0.0444 |
| 9740 |
2 |
0.108 |
| 36100 |
2 |
0.111 |
| 72 |
1 |
0.000992 |
| 665 |
1 |
0.0513 |
| 3300 |
1 |
0.05 |
| 4990 |
1 |
0.0526 |
| 5940 |
1 |
0.0556 |
| 6730 |
1 |
0.0526 |
| 14200 |
1 |
0.0556 |
|