Cluster no. 267
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Cluster is part of supercluster: 174
Cluster characteristics:
| size |
85 |
| size_real |
85 |
| ecount |
153 |
| supercluster |
174 |
| annotations_summary |
|
| pair_completeness |
0.180555555555556 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0117647058823529 |
| satellite_probability |
8.5036589366246e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
28 |
| S4 |
32 |
| S6 |
25 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
23.0 |
17.5 |
15 |
| S4 |
17.5 |
17.0 |
19 |
| S6 |
15.0 |
19.0 |
10 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.140 |
0.902 |
0.94 |
| S4 |
0.902 |
0.909 |
1.23 |
| S6 |
0.940 |
1.230 |
0.79 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 17 |
18 |
0.0118 |
| 10200 |
3 |
0.0968 |
| 6630 |
2 |
0.0635 |
| 35 |
1 |
0.000938 |
| 236 |
1 |
0.0157 |
| 880 |
1 |
0.0286 |
| 2980 |
1 |
0.0328 |
| 3880 |
1 |
0.0312 |
| 9890 |
1 |
0.0323 |
| 19100 |
1 |
0.0328 |
| 26500 |
1 |
0.0328 |
| 29300 |
1 |
0.0328 |
| 29600 |
1 |
0.0328 |
| 33400 |
1 |
0.0328 |
| 42500 |
1 |
0.0328 |
|
CL267 ----> CL17
No. of shared pairs: :18