Cluster no. 266

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Cluster is part of supercluster: 173

Cluster characteristics:

size 85
size_real 85
ecount 611
supercluster 173
annotations_summary 85.88% organelle/plastid
pair_completeness 0.545454545454545
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0117647058823529
satellite_probability 5.53369227532392e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 30
S4 27
S6 28
comparative analysis - number of edges between species:
S5 S4 S6
S5 72 76 74
S4 76 62 58
S6 74 58 61
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.893 1.070 1.060
S4 1.070 0.986 0.937
S6 1.060 0.937 1.000

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
plastid plastid 73 0.86

clusters connected through mates:

Cluster Number of shared
read pairs		 k
304 12 0.49
167 9 0.327
44 1 0.00186

CL266 ----> CL304

image

No. of shared pairs: :12