Cluster no. 262

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Cluster is part of supercluster: 169

Cluster characteristics:

size 87
size_real 87
ecount 365
supercluster 169
annotations_summary 13.79% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-PROT
4.60% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-PROT
1.15% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-RT
pair_completeness 0.553571428571429
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0114942528735632
satellite_probability 5.53369227532392e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 30
S4 30
S6 27
comparative analysis - number of edges between species:
S5 S4 S6
S5 58.0 45 39.5
S4 45.0 45 31.0
S6 39.5 31 31.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.040 0.953 0.997
S4 0.953 1.120 0.921
S6 0.997 0.921 1.100

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-PROT Reina Ty3-PROT 4 0.046
Tekay Ty3-PROT Tekay Ty3-PROT 12 0.138
Tekay Ty3-RT Tekay Ty3-RT 1 0.011

clusters connected through mates:

Cluster Number of shared
read pairs		 k
163 7 0.0909
2960 2 0.138
7260 2 0.138
673 1 0.0455
6110 1 0.069