Cluster no. 260

Go back to cluster table

Cluster is part of supercluster: 167

Cluster characteristics:

size 88
size_real 88
ecount 147
supercluster 167
annotations_summary
pair_completeness 0.173333333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0113636363636364
satellite_probability 8.12169207732869e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 33
S4 26
S6 29
comparative analysis - number of edges between species:
S5 S4 S6
S5 25.0 13.5 22.5
S4 13.5 11.0 14.0
S6 22.5 14.0 11.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.988 0.845 1.140
S4 0.845 1.090 1.130
S6 1.140 1.130 0.717

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
115 18 0.0327
6 6 0.00168
1 1 0.000298
2 1 0.00032
13 1 0.000679
73 1 0.00109
77 1 0.0012
134 1 0.0034
591 1 0.0238
10900 1 0.0308
48000 1 0.0312

CL260 ----> CL115

image

No. of shared pairs: :18