Cluster no. 259
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Cluster is part of supercluster: 166
Cluster characteristics:
| size |
90 |
| size_real |
90 |
| ecount |
231 |
| supercluster |
166 |
| annotations_summary |
|
| pair_completeness |
0.139240506329114 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0111111111111111 |
| satellite_probability |
6.94904844624655e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
27 |
| S4 |
30 |
| S6 |
33 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
18.0 |
23 |
30.5 |
| S4 |
23.0 |
19 |
28.0 |
| S6 |
30.5 |
28 |
31.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.813 |
1.060 |
1.100 |
| S4 |
1.060 |
0.896 |
1.030 |
| S6 |
1.100 |
1.030 |
0.894 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters with similarity:
| Cluster |
Number of similarity hits |
|
|
|
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 32 |
33 |
0.0244 |
| 18 |
12 |
0.00957 |
| 586 |
5 |
0.118 |
| 825 |
4 |
0.093 |
| 2970 |
1 |
0.027 |
| 3590 |
1 |
0.0282 |
| 6880 |
1 |
0.0278 |
| 8000 |
1 |
0.0282 |
| 21700 |
1 |
0.0286 |
| 31700 |
1 |
0.0286 |
| 44900 |
1 |
0.0286 |
| 46500 |
1 |
0.0286 |
|
CL259 ----> CL32
No. of shared pairs: :33
CL259 ----> CL18
No. of shared pairs: :12