Cluster no. 254

Go back to cluster table

Cluster is part of supercluster: 161

Cluster characteristics:

size 95
size_real 95
ecount 154
supercluster 161
annotations_summary 2.11% Class_I/pararetrovirus:PARA-PROT
1.05% Class_I/LTR/Ty1_copia/Ikeros:Ty1-INT
pair_completeness 0.144578313253012
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0105263157894737
satellite_probability 6.94904844624655e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 40
S4 23
S6 32
comparative analysis - number of edges between species:
S5 S4 S6
S5 35.0 14.5 23.5
S4 14.5 5.0 7.0
S6 23.5 7.0 24.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.01 1.150 0.910
S4 1.15 1.100 0.746
S6 0.91 0.746 1.240

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
pararetrovirus PARA-PROT pararetrovirus PARA-PROT 2 0.021
Ikeros Ty1-INT Ikeros Ty1-INT 1 0.011

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1270 3 0.0723
9270 2 0.0541
10 1 0.000442
42 1 0.00105
402 1 0.019
1520 1 0.0247
3430 1 0.026
5540 1 0.0267
8920 1 0.027
12300 1 0.027
15200 1 0.0274
17100 1 0.0274
20000 1 0.0274
47800 1 0.0274