Cluster no. 253
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Cluster is part of supercluster: 160
Cluster characteristics:
| size |
95 |
| size_real |
95 |
| ecount |
233 |
| supercluster |
160 |
| annotations_summary |
|
| pair_completeness |
0.417910447761194 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0105263157894737 |
| satellite_probability |
1.0345154302985e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
19 |
| S4 |
40 |
| S6 |
36 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
9.0 |
21.5 |
16.5 |
| S4 |
21.5 |
53.0 |
34.5 |
| S6 |
16.5 |
34.5 |
26.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.949 |
0.978 |
1.060 |
| S4 |
0.978 |
1.040 |
0.958 |
| S6 |
1.060 |
0.958 |
1.020 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 1770 |
6 |
0.25 |
| 1990 |
6 |
0.255 |
| 892 |
4 |
0.16 |
| 6880 |
2 |
0.093 |
| 10600 |
2 |
0.0952 |
| 62 |
1 |
0.00192 |
| 1130 |
1 |
0.0408 |
| 6380 |
1 |
0.0465 |
| 7630 |
1 |
0.0476 |
| 12500 |
1 |
0.0476 |
| 17200 |
1 |
0.0488 |
| 44000 |
1 |
0.0488 |
|