Cluster no. 248

Go back to cluster table

Cluster is part of supercluster: 155

Cluster characteristics:

size 101
size_real 101
ecount 220
supercluster 155
annotations_summary
pair_completeness 0.231707317073171
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0099009900990099
satellite_probability 1.02273405921547e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 29
S4 45
S6 27
comparative analysis - number of edges between species:
S5 S4 S6
S5 13.0 24.5 19
S4 24.5 39.0 32
S6 19.0 32.0 17
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.896 0.999 1.090
S4 0.999 0.941 1.080
S6 1.090 1.080 0.809

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
24 2

clusters connected through mates:

Cluster Number of shared
read pairs		 k
24 21 0.0183
171 2 0.0118
4740 2 0.0588
5840 2 0.0597
38000 2 0.0615
13 1 0.000678
421 1 0.0244
461 1 0.0235
1330 1 0.0282
1650 1 0.029
1750 1 0.0286
1920 1 0.0286
5770 1 0.0299
12400 1 0.0303
12500 1 0.0303
13300 1 0.0303
17000 1 0.0308
22300 1 0.0308
32900 1 0.0308
43300 1 0.0308
46900 1 0.0308

CL248 ----> CL24

image

No. of shared pairs: :21