Cluster no. 247

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Cluster is part of supercluster: 154

Cluster characteristics:

size 101
size_real 101
ecount 570
supercluster 154
annotations_summary
pair_completeness 0.383561643835616
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.0099009900990099
satellite_probability 1.1303462298218e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 32
S4 34
S6 35
comparative analysis - number of edges between species:
S5 S4 S6
S5 44.0 47.5 60.5
S4 47.5 60.0 73.5
S6 60.5 73.5 103.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.090 0.984 0.957
S4 0.984 1.040 0.977
S6 0.957 0.977 1.050

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
44 1

clusters connected through mates:

Cluster Number of shared
read pairs		 k
1210 11 0.379
2500 3 0.115
5520 3 0.122
273 2 0.05
7210 2 0.0816
19100 2 0.0851
1 1 0.000299
3 1 0.000452
5 1 0.000447
7 1 0.000461
38 1 0.00184
40 1 0.00114
44 1 0.00182
75 1 0.00188
106 1 0.00423
141 1 0.00985
742 1 0.0339
1320 1 0.0408
4490 1 0.04
5210 1 0.0408
10800 1 0.0435
11200 1 0.0417

CL247 ----> CL1210

image

No. of shared pairs: :11