Cluster no. 245

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Cluster is part of supercluster: 152

Cluster characteristics:

size 105
size_real 105
ecount 305
supercluster 152
annotations_summary 2.86% Class_I/LTR/Ty3_gypsy/chromovirus/Reina:Ty3-INT
pair_completeness 0.544117647058824
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00952380952380952
satellite_probability 5.9149989235368e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 24
S4 38
S6 43
comparative analysis - number of edges between species:
S5 S4 S6
S5 7.0 30.0 25.5
S4 30.0 56.0 47.5
S6 25.5 47.5 36.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.547 1.100 1.140
S4 1.100 0.958 0.996
S6 1.140 0.996 0.924

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Reina Ty3-INT Reina Ty3-INT 3 0.029

clusters connected through mates:

Cluster Number of shared
read pairs		 k
395 8 0.32
1 1 3e-04
10 1 0.000446
11 1 0.000466
85 1 0.0034
34500 1 0.0606
47300 1 0.0606