Cluster no. 242

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Cluster is part of supercluster: 149

Cluster characteristics:

size 107
size_real 107
ecount 275
supercluster 149
annotations_summary
pair_completeness 0.0918367346938775
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00934579439252336
satellite_probability 5.046097049556e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 41
S4 34
S6 32
comparative analysis - number of edges between species:
S5 S4 S6
S5 53.0 39.0 33.5
S4 39.0 21.0 21.5
S6 33.5 21.5 13.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.925 1.050 1.080
S4 1.050 0.869 1.070
S6 1.080 1.070 0.773

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters with similarity:

Cluster Number of similarity hits
4 7
11 6
8 3

clusters connected through mates:

Cluster Number of shared
read pairs		 k
115 15 0.0266
4070 4 0.0851
4 3 0.000936
2570 3 0.0625
330 2 0.0294
8400 2 0.0435
49 1 0.00085
98 1 0.00125
108 1 0.00127
682 1 0.0189
5550 1 0.022
7340 1 0.0215
7930 1 0.0217
12500 1 0.0217
22200 1 0.022
23500 1 0.022
25200 1 0.022
26300 1 0.022
33000 1 0.022
43400 1 0.022

CL242 ----> CL115

image

No. of shared pairs: :15