Cluster no. 241

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Cluster is part of supercluster: 148

Cluster characteristics:

size 107
size_real 107
ecount 322
supercluster 148
annotations_summary 29.91% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
9.35% Class_I/LTR/Ty3_gypsy/chromovirus/CRM:Ty3-GAG
pair_completeness 0.671875
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00934579439252336
satellite_probability 1.9456658316349e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 31
S4 29
S6 47
comparative analysis - number of edges between species:
S5 S4 S6
S5 22.0 21 48.5
S4 21.0 15 37.0
S6 48.5 37 72.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.846 1.010 1.080
S4 1.010 0.906 1.040
S6 1.080 1.040 0.935

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
CRM Ty3-GAG CRM Ty3-GAG 10 0.093
Tekay Ty3-GAG Tekay Ty3-GAG 32 0.299

clusters connected through mates:

Cluster Number of shared
read pairs		 k
9400 2 0.167
35 1 0.000955
41 1 0.000911
127 1 0.0056
4930 1 0.08
28500 1 0.087