Cluster no. 240

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Cluster is part of supercluster: 147

Cluster characteristics:

size 107
size_real 107
ecount 290
supercluster 147
annotations_summary 0.93% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-GAG
pair_completeness 0.3375
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00934579439252336
satellite_probability 1.17646958017996e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 45
S4 33
S6 29
comparative analysis - number of edges between species:
S5 S4 S6
S5 57.0 35.0 26.5
S4 35.0 33.0 26.5
S6 26.5 26.5 24.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.180 0.906 0.842
S4 0.906 1.070 1.060
S6 0.842 1.060 1.170

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Tekay Ty3-GAG Tekay Ty3-GAG 1 0.0093

clusters connected through mates:

Cluster Number of shared
read pairs		 k
2010 3 0.105
2030 3 0.0984
2390 3 0.1
12000 3 0.107
1100 2 0.0678
7060 2 0.0702
7790 2 0.0714
9650 2 0.0714
38500 2 0.0727
42800 2 0.0727
103 1 0.00133
1600 1 0.0328
8000 1 0.0357
8170 1 0.0357
9840 1 0.0357
10500 1 0.037
12700 1 0.0357
13000 1 0.0357
18400 1 0.0364
39900 1 0.0364
40600 1 0.0364