Cluster no. 239
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Cluster is part of supercluster: 146
Cluster characteristics:
| size |
109 |
| size_real |
109 |
| ecount |
428 |
| supercluster |
146 |
| annotations_summary |
|
| pair_completeness |
0.453333333333333 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.128440366972477 |
| satellite_probability |
2.18916926459579e-14 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
52 |
| S4 |
38 |
| S6 |
19 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
86 |
67 |
35 |
| S4 |
67 |
62 |
31 |
| S6 |
35 |
31 |
14 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.040 |
0.953 |
0.996 |
| S4 |
0.953 |
1.040 |
1.040 |
| S6 |
0.996 |
1.040 |
0.936 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 183 |
2 |
0.032 |
| 2600 |
2 |
0.0833 |
| 4590 |
2 |
0.0909 |
| 2 |
1 |
0.000321 |
| 7 |
1 |
0.000461 |
| 57 |
1 |
0.000878 |
| 58 |
1 |
0.000826 |
| 168 |
1 |
0.00641 |
|