Cluster no. 238

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Cluster is part of supercluster: 145

Cluster characteristics:

size 110
size_real 110
ecount 347
supercluster 145
annotations_summary 65.45% Class_I/LINE:LINE-RT
pair_completeness 0.617647058823529
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00909090909090909
satellite_probability 3.17876592687763e-21
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 35
S4 28
S6 47
comparative analysis - number of edges between species:
S5 S4 S6
S5 45.0 27.5 49.5
S4 27.5 12.0 34.5
S6 49.5 34.5 67.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.050 1.06 0.932
S4 1.060 0.76 1.070
S6 0.932 1.07 1.020

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
LINE LINE-RT LINE LINE-RT 72 0.65

clusters connected through mates:

Cluster Number of shared
read pairs		 k
382 9 0.36
618 6 0.308
1500 2 0.121
602 1 0.0588