Cluster no. 237
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Cluster is part of supercluster: 144
Cluster characteristics:
| size |
110 |
| size_real |
110 |
| ecount |
587 |
| supercluster |
144 |
| annotations_summary |
|
| pair_completeness |
0.527777777777778 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0454545454545455 |
| satellite_probability |
1.43433076625414e-18 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
40 |
| S4 |
35 |
| S6 |
35 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
65.0 |
65.5 |
74.0 |
| S4 |
65.5 |
55.0 |
65.5 |
| S6 |
74.0 |
65.5 |
57.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.912 |
1.010 |
1.080 |
| S4 |
1.010 |
0.933 |
1.050 |
| S6 |
1.080 |
1.050 |
0.867 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 3210 |
4 |
0.2 |
| 1620 |
2 |
0.1 |
| 10 |
1 |
0.000445 |
| 22 |
1 |
0.00122 |
| 24 |
1 |
0.000883 |
| 72 |
1 |
0.000992 |
| 79 |
1 |
0.00248 |
| 100 |
1 |
0.00333 |
| 122 |
1 |
0.00245 |
| 143 |
1 |
0.00488 |
| 454 |
1 |
0.0408 |
| 16700 |
1 |
0.0556 |
|