Cluster no. 236
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Cluster is part of supercluster: 143
Cluster characteristics:
| size |
112 |
| size_real |
112 |
| ecount |
1205 |
| supercluster |
143 |
| annotations_summary |
|
| pair_completeness |
0.244444444444444 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00892857142857143 |
| satellite_probability |
1.0516263740795e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
30 |
| S4 |
41 |
| S6 |
41 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
80 |
109 |
102 |
| S4 |
109 |
156 |
174 |
| S6 |
102 |
174 |
201 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.140 |
1.030 |
0.885 |
| S4 |
1.030 |
0.978 |
1.000 |
| S6 |
0.885 |
1.000 |
1.070 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 13 |
2 |
0.00135 |
| 14 |
2 |
0.00168 |
| 21 |
1 |
0.000439 |
| 24 |
1 |
0.00087 |
| 36 |
1 |
0.000916 |
| 43 |
1 |
0.00114 |
| 52 |
1 |
0.00117 |
| 77 |
1 |
0.00119 |
| 103 |
1 |
0.00132 |
| 129 |
1 |
0.00319 |
| 170 |
1 |
0.00816 |
| 267 |
1 |
0.0157 |
| 407 |
1 |
0.0211 |
| 1300 |
1 |
0.0256 |
| 4620 |
1 |
0.0274 |
| 14700 |
1 |
0.0286 |
| 20500 |
1 |
0.0286 |
|