Cluster no. 235
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Cluster is part of supercluster: 142
Cluster characteristics:
| size |
113 |
| size_real |
113 |
| ecount |
181 |
| supercluster |
142 |
| annotations_summary |
|
| pair_completeness |
0.241758241758242 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0530973451327434 |
| satellite_probability |
3.19671953366944e-18 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
30 |
| S4 |
37 |
| S6 |
46 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
16.0 |
13.5 |
15 |
| S4 |
13.5 |
27.0 |
20 |
| S6 |
15.0 |
20.0 |
41 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.460 |
0.908 |
0.803 |
| S4 |
0.908 |
1.340 |
0.787 |
| S6 |
0.803 |
0.787 |
1.280 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 189 |
5 |
0.0452 |
| 30 |
4 |
0.00242 |
| 363 |
2 |
0.0354 |
| 960 |
2 |
0.0494 |
| 5930 |
2 |
0.0548 |
| 11900 |
2 |
0.0556 |
| 113 |
1 |
0.00213 |
| 495 |
1 |
0.0225 |
| 985 |
1 |
0.0238 |
| 1430 |
1 |
0.0263 |
| 2680 |
1 |
0.0263 |
| 4270 |
1 |
0.027 |
| 5760 |
1 |
0.0274 |
| 16700 |
1 |
0.0282 |
| 27300 |
1 |
0.0282 |
| 35000 |
1 |
0.0282 |
| 47900 |
1 |
0.0282 |
|