Cluster no. 234

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Cluster is part of supercluster: 141

Cluster characteristics:

size 114
size_real 114
ecount 1154
supercluster 141
annotations_summary 0.88% Class_I/LTR/Ty3_gypsy/chromovirus/Tekay:Ty3-INT
0.88% Class_I/LTR/Ty1_copia/Ale:Ty1-GAG
pair_completeness 0.212765957446808
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.684210526315789
satellite_probability 0.000166553549718239
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 40
S4 43
S6 31
comparative analysis - number of edges between species:
S5 S4 S6
S5 156 164 123
S4 164 132 102
S6 123 102 89
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.919 1.070 1.020
S4 1.070 0.964 0.943
S6 1.020 0.943 1.040

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
Ale Ty1-GAG Ale Ty1-GAG 1 0.0088
Tekay Ty3-INT Tekay Ty3-INT 1 0.0088

clusters with similarity:

Cluster Number of similarity hits
7 5

clusters connected through mates:

Cluster Number of shared
read pairs		 k
7 9 0.00412
9 2 0.00171
19 2 0.00129
37 2 0.00198
115 2 0.00359
1 1 0.000298
4 1 0.000313
8 1 0.000486
12 1 0.000359
13 1 0.000676
21 1 0.000439
33 1 0.00116
38 1 0.00179
40 1 0.00112
42 1 0.00105
45 1 0.000955
48 1 0.00125
50 1 0.00108
52 1 0.00116
54 1 0.000959
57 1 0.000866
63 1 0.00085
86 1 0.00156
94 1 0.00118
121 1 0.00234
249 1 0.0183
36100 1 0.0263
39300 1 0.0263