Cluster no. 233
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Cluster is part of supercluster: 140
Cluster characteristics:
| size |
116 |
| size_real |
116 |
| ecount |
300 |
| supercluster |
140 |
| annotations_summary |
|
| pair_completeness |
0.589041095890411 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00862068965517241 |
| satellite_probability |
4.10825630042199e-21 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
31 |
| S4 |
41 |
| S6 |
44 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
18.0 |
25 |
32.5 |
| S4 |
25.0 |
33 |
46.0 |
| S6 |
32.5 |
46 |
42.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.947 |
0.955 |
1.070 |
| S4 |
0.955 |
0.915 |
1.100 |
| S6 |
1.070 |
1.100 |
0.868 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 2240 |
2 |
0.111 |
| 7470 |
2 |
0.121 |
| 62 |
1 |
0.00194 |
| 10300 |
1 |
0.0606 |
| 13500 |
1 |
0.0606 |
| 23500 |
1 |
0.0625 |
| 32100 |
1 |
0.0625 |
| 33400 |
1 |
0.0625 |
|