Cluster no. 232
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Cluster is part of supercluster: 139
Cluster characteristics:
| size |
116 |
| size_real |
116 |
| ecount |
204 |
| supercluster |
139 |
| annotations_summary |
|
| pair_completeness |
0.364705882352941 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.0344827586206897 |
| satellite_probability |
5.06321729415754e-19 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
33 |
| S4 |
49 |
| S6 |
34 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
14.0 |
26.5 |
13.5 |
| S4 |
26.5 |
37.0 |
29.5 |
| S6 |
13.5 |
29.5 |
14.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
0.979 |
1.080 |
0.895 |
| S4 |
1.080 |
0.873 |
1.140 |
| S6 |
0.895 |
1.140 |
0.879 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 639 |
5 |
0.135 |
| 623 |
4 |
0.11 |
| 2330 |
3 |
0.0984 |
| 1160 |
2 |
0.0678 |
| 6260 |
2 |
0.069 |
| 7730 |
2 |
0.0702 |
| 90 |
1 |
0.00194 |
| 1260 |
1 |
0.0323 |
| 3260 |
1 |
0.0333 |
| 11100 |
1 |
0.0364 |
| 28900 |
1 |
0.0357 |
| 30600 |
1 |
0.0357 |
| 33800 |
1 |
0.0357 |
| 35800 |
1 |
0.0357 |
|