Cluster no. 230

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Cluster is part of supercluster: 137

Cluster characteristics:

size 119
size_real 119
ecount 188
supercluster 137
annotations_summary 12.61% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatV:Ty3-aRH
7.56% Class_I/LTR/Ty3_gypsy/non-chromovirus/OTA/Ogre_Tat/TatIV_Ogre:Ty3-aRH
pair_completeness 0.337078651685393
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00840336134453781
satellite_probability 1.17646958017996e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 41
S4 30
S6 48
comparative analysis - number of edges between species:
S5 S4 S6
S5 35.0 11.0 22.5
S4 11.0 18.0 18.5
S6 22.5 18.5 31.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 1.400 0.636 0.858
S4 0.636 1.500 1.020
S6 0.858 1.020 1.120

protein domains:

protein domains:


Reads annotation summary

  cl_string domain Freq proportion
TatIV_Ogre Ty3-aRH TatIV_Ogre Ty3-aRH 9 0.076
TatV Ty3-aRH TatV Ty3-aRH 15 0.126

clusters connected through mates:

Cluster Number of shared
read pairs
k
362 8 0.167
309 7 0.137
21400 2 0.0656
19 1 0.00065
56 1 0.000851
5160 1 0.0317
6970 1 0.0328
10800 1 0.0323
13500 1 0.0323
19200 1 0.0328
32100 1 0.0328