Cluster no. 228
Go back to cluster table
Cluster is part of supercluster: 135
Cluster characteristics:
| size |
122 |
| size_real |
122 |
| ecount |
324 |
| supercluster |
135 |
| annotations_summary |
|
| pair_completeness |
0.402298850574713 |
| pbs_score |
None |
| TR_score |
None |
| TR_monomer_length |
None |
| loop_index |
0.00819672131147541 |
| satellite_probability |
1.08796458838458e-20 |
| consensus |
None |
| TAREAN_annotation |
Other |
| orientation_score |
1 |
comparative analysis:
Comparative analysis - species read counts:
| Species |
Read count |
| S5 |
34 |
| S4 |
45 |
| S6 |
43 |
comparative analysis - number of edges between species:
|
S5 |
S4 |
S6 |
| S5 |
24.0 |
27 |
33.5 |
| S4 |
27.0 |
52 |
42.0 |
| S6 |
33.5 |
42 |
43.0 |
comparative analysis - observed/expected number of edges between species
|
S5 |
S4 |
S6 |
| S5 |
1.090 |
0.856 |
1.080 |
| S4 |
0.856 |
1.150 |
0.949 |
| S6 |
1.080 |
0.949 |
0.992 |
protein domains:
No protein domains detected
protein domains:
Reads annotation summary
No similarity hits to repeat databases found
clusters connected through mates:
| Cluster |
Number of shared
read pairs |
k |
|
| 596 |
5 |
0.143 |
| 732 |
3 |
0.0938 |
| 90 |
2 |
0.00389 |
| 18900 |
2 |
0.0741 |
| 16 |
1 |
0.000918 |
| 54 |
1 |
0.000969 |
| 98 |
1 |
0.00128 |
| 103 |
1 |
0.00133 |
| 2560 |
1 |
0.0351 |
|