Cluster no. 227

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Cluster is part of supercluster: 134

Cluster characteristics:

size 122
size_real 122
ecount 575
supercluster 134
annotations_summary
pair_completeness 0.270833333333333
pbs_score None
TR_score None
TR_monomer_length None
loop_index 0.00819672131147541
satellite_probability 1.12274535709515e-20
consensus None
TAREAN_annotation Other
orientation_score 1

comparative analysis:


Comparative analysis - species read counts:
Species Read count
S5 37
S4 41
S6 44
comparative analysis - number of edges between species:
S5 S4 S6
S5 55.0 54.5 74.0
S4 54.5 56.0 65.5
S6 74.0 65.5 76.0
comparative analysis - observed/expected number of edges between species
S5 S4 S6
S5 0.939 0.970 1.080
S4 0.970 1.040 0.993
S6 1.080 0.993 0.941

protein domains:

No protein domains detected

protein domains:


Reads annotation summary

No similarity hits to repeat databases found

clusters connected through mates:

Cluster Number of shared
read pairs		 k
813 6 0.136
1130 6 0.15
3000 5 0.132
848 4 0.092
1120 4 0.103
3660 3 0.0822
4200 3 0.08
9950 2 0.0548
11600 2 0.0548
13400 2 0.0548
20500 2 0.0556
45000 2 0.0556
345 1 0.0192
380 1 0.0196
909 1 0.0238
2120 1 0.0256
2140 1 0.0263
2300 1 0.0267
3670 1 0.0274
6040 1 0.027
6830 1 0.027
7470 1 0.0274
14300 1 0.0278
18800 1 0.0278
26900 1 0.0278
27200 1 0.0278
29600 1 0.0278